PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044716.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 168aa    MW: 18254.3 Da    PI: 6.5124
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044716.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.4e-152269354
                   AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                          + GVr++  +g+WvAeIr p   + r +r +lg+f ta eAa a++ a+ k +
  HL.SW.v1.0.G044716.1 22 FIGVRQRT-WGKWVAEIRKP---N-RgARLWLGTFNTAIEAAGAYDDAAWKQY 69
                          78***999.**********8...3.35********************996655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-242078No hitNo description
SuperFamilySSF541716.54E-192178IPR016177DNA-binding domain
SMARTSM003801.7E-252186IPR001471AP2/ERF domain
PROSITE profilePS5103219.6122178IPR001471AP2/ERF domain
PRINTSPR003675.3E-82233IPR001471AP2/ERF domain
PfamPF008474.4E-102266IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-262278IPR001471AP2/ERF domain
PRINTSPR003675.3E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MERSRKKRMK GKGGPDNSKC TFIGVRQRTW GKWVAEIRKP NRGARLWLGT FNTAIEAAGA  60
YDDAAWKQYG PGAKLNLPGR HHHYPQYSST SSGADFESAG PLSRAVSAES GEFGGLDGFT  120
WPQLGYGEDD DYMELMMNSS VELSFGGEGE CLFSHLIGDG SACISFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-142280362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-142280665ATERF1
3gcc_A2e-142280665ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102188.13e-44dehydration-responsive element-binding protein 2D
SwissprotQ9LQZ25e-36DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A2P5FYW53e-49A0A2P5FYW5_TREOI; AP2/ERF domain containing protein
STRINGXP_010102188.11e-43(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.16e-27ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]