PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044682.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family TCP
Protein Properties Length: 380aa    MW: 39865.2 Da    PI: 4.9705
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044682.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.62.2e-34942002108
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasns 85 
                           a++++ ++++hTkv+gR+RR+R++  caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++++a ++          +  + +s
  HL.SW.v1.0.G044682.1  94 AVARRMSKDRHTKVEGRGRRIRMPPACAARIFQLTRELGLKSDGETIRWLLEHAEPAIIEATGTGTIPAIAVsvggtL----KIPTTSS 178
                           788999**********************************************************99999555322220....1111111 PP

                   TCP  86 ssg.kaaksaakskksqksaasal 108
                             +  + ++ a++k+++k+++  +
  HL.SW.v1.0.G044682.1 179 ARPnGEITEIAPRKRRRKESN--S 200
                           112212222223333333332..3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.599100154IPR017887Transcription factor TCP subgroup
PfamPF036342.4E-27100176IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDDSQDTNEI IDVNDEEQNN NTTNDISASE TSILEHLPSQ TPAASNFLEV ETVQSSSMVP  60
MKEELTETEQ ELDDSSASTN LIKVPISTTS SGAAVARRMS KDRHTKVEGR GRRIRMPPAC  120
AARIFQLTRE LGLKSDGETI RWLLEHAEPA IIEATGTGTI PAIAVSVGGT LKIPTTSSAR  180
PNGEITEIAP RKRRRKESNS EFIDASHQVS VSSGLAPIAP MAYGAGNGAQ GLVPTWQVGA  240
NNAAAGHFIM FPNSGAVPGM PNQAQLWAFP AAGGATTSFF GVQTRPISNF VSALQPVQLR  300
DPQVSSGSVS SKATTGARAS GSSTMGPTLS SSNTLATSSS GGVGNGDNGT DSTTTTQMLR  360
DFSLEIFDKK ELPLMGRSQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190194RKRRR
2190196RKRRRKE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00064PBMTransfer from AT5G51910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106814.11e-146transcription factor TCP19
TrEMBLA0A2P5ER991e-162A0A2P5ER99_TREOI; TCP transcription factor
STRINGXP_010106814.11e-145(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-63TCP family protein