PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044315.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 155aa    MW: 17129.5 Da    PI: 5.3592
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044315.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.3e-202575255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +y+GVr+++ +g+++AeIrd  + ng  +r +lg+f taeeAa+a+++a+ +++g
  HL.SW.v1.0.G044315.1 25 RYRGVRRRP-WGKFAAEIRDS-NrNG--ARLWLGTFTTAEEAARAYDRAAFSIRG 75
                          6********.**********4.4254..************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-142575IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-312584IPR001471AP2/ERF domain
SMARTSM003805.8E-342589IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-232584IPR016177DNA-binding domain
PROSITE profilePS5103223.922583IPR001471AP2/ERF domain
CDDcd000188.52E-262583No hitNo description
PRINTSPR003673.1E-112637IPR001471AP2/ERF domain
PRINTSPR003673.1E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MEEDNRGSHR KDKEGGGQEG TKDVRYRGVR RRPWGKFAAE IRDSNRNGAR LWLGTFTTAE  60
EAARAYDRAA FSIRGPFAIL NFPSEYPALE GLSVPSSSSS TASFPGSSSS SSSSSSSSYR  120
NAETQHGREV FEFEYLDDKL LDELLDFENK GNRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-33141403114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827144.19e-54PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-45ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2P5E8494e-55A0A2P5E849_TREOI; AP2/ERF transcription factor
STRINGXP_010039174.11e-50(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]