PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G042420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 323aa    MW: 35547.1 Da    PI: 4.1832
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G042420.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-191262155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          + y+GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa a+++a+++++g
  HL.SW.v1.0.G042420.1 12 CNYRGVRQRT-WGKWVAEIREP---N-RgRRLWLGTFPTALEAALAYDEAARAMYG 62
                          56*****999.**********8...3.35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.97E-321271No hitNo description
PfamPF008474.1E-141262IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-201370IPR016177DNA-binding domain
PROSITE profilePS5103221.6011370IPR001471AP2/ERF domain
SMARTSM003801.6E-341376IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-301371IPR001471AP2/ERF domain
PRINTSPR003671.8E-91425IPR001471AP2/ERF domain
PRINTSPR003671.8E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MKGKGGPDNS RCNYRGVRQR TWGKWVAEIR EPNRGRRLWL GTFPTALEAA LAYDEAARAM  60
YGPCARLNLP NITDYRSFEL SSKDSSSLAT PSGSSSVTTP AGSDSTTTSN SILSEVCADE  120
ESKVKGIASG GKNEVIEGES KIYPRPLPVA EVATPLSSVK SEVKAEEASP QPQYVKEETK  180
EEPMEEEYQT WDKLGDTGEN FLQSFSMDEM FDVEELLGIM DTNAGSMEDV CYNASQWDDE  240
EFQSDKPSNL SYQLANPDAK LLGSLCHMEH ASSGLDYSFD FLKPGRLEDN NICIDDQAYT  300
WDYPITSFEM EGKSGCRNNG AD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-171370260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX3076445e-45JX307644.1 Sophora davidii putative dehydration responsive element-binding protein (DREB) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087025.21e-126dehydration-responsive element-binding protein 2C isoform X2
TrEMBLA0A2P5E0P01e-149A0A2P5E0P0_PARAD; AP2/ERF transcription factor
STRINGXP_010087025.11e-125(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.15e-43ERF family protein