PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G040701.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 292aa    MW: 32215.6 Da    PI: 6.4238
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G040701.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.31.2e-387106199
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC ++C++apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ 
  HL.SW.v1.0.G040701.1   7 PCGACKFLRRKCINGCIFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVV 95 
                           7*************************89************************************************************* PP

                DUF260  89 qlkaelallke 99 
                           +l+a+la+lke
  HL.SW.v1.0.G040701.1  96 NLQAQLATLKE 106
                           ******99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.9036108IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MTGFGSPCGA CKFLRRKCIN GCIFAPYFCH EQGATHFAAI HKVFGASNVS KLLAHLPVTD  60
RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LATLKELQLA SSQRSQSFNN  120
GSGTVVNLQA QLATLKELQL ASFQRSQSFN NGSGTVNPNN GKFSGKVESR DDDDRDHHDH  180
GAQYGWFEME SSKLSSNYST SAAGTAMAYN DKNGVLIINP NPNSSGNHYN KVDQIIPDNH  240
HENICYGSFE ETNNSFSMSS FESIMQPNYY YRPWGAFQEY CDELQSMVQN S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3431017104LOB family transfactor Ramosa2.1
5ly0_B3e-3431017104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111894.12e-90LOB domain-containing protein 29
TrEMBLA0A2P5FBA91e-100A0A2P5FBA9_TREOI; Lateral organ boundaries domain containing protein
STRINGXP_010111894.19e-90(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35713366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.18e-55lateral organ boundaries-domain 29