PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G039799.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 127aa    MW: 14345.4 Da    PI: 9.7561
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G039799.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26046.69.5e-153712599
                DUF260 25 eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99
                          e+p+kf nvh +FGasnv+kl +++ +++r++      y+Ae r++dP y+ +g+i+ lq+q+ +l++el+++++
  HL.SW.v1.0.G039799.1  3 ERPQKFVNVHNIFGASNVSKLHNEVLPHQRPA------YKAETRMKDPAYNYLGTISVLQRQVIRLQKELDATNT 71
                          689***************************95......********************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.8E-12370IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MPERPQKFVN VHNIFGASNV SKLHNEVLPH QRPAYKAETR MKDPAYNYLG TISVLQRQVI  60
RLQKELDATN TDLMRHAHTI DHHYVAKSIH PRFGLAHIDH SSGTLRSILT YFDPSSGVDP  120
IVPVFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3027734115LOB family transfactor Ramosa2.1
5ly0_B1e-3027734115LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029135.11e-35PREDICTED: LOB domain-containing protein 25
RefseqXP_015879300.11e-35LOB domain-containing protein 25
RefseqXP_015897788.11e-35LOB domain-containing protein 25-like
SwissprotQ8L8Q36e-31LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A2P5EFD32e-36A0A2P5EFD3_TREOI; Lateral organ boundaries domain containing protein
STRINGXP_010029135.14e-35(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109134112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.13e-33LOB domain-containing protein 25
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]