PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G039795.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NF-YC
Protein Properties Length: 262aa    MW: 29243.9 Da    PI: 6.5834
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G039795.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.46.9e-56751781101
                 NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 
                           ql++fw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trt
  HL.SW.v1.0.G039795.1  75 QLQNFWANQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 163
                           89******99999**************************************************************************** PP

                 NF-YC  87 difdflvdivprdel 101
                           difdflvdivpr++l
  HL.SW.v1.0.G039795.1 164 DIFDFLVDIVPREDL 178
                           ************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.68E-3365169IPR009072Histone-fold
PfamPF008081.6E-2197160IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-3798175IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDHQGHNQPQ SMMMGGGGGA QMAYGYQSNQ MGGNPTHGSV GGIQSSSQPG GAQLAQHQLA  60
YQHIHQQQQQ QLQQQLQNFW ANQYQEIEKV TDFKNHSLPL ARIKKIMKAD EDVRMISAEA  120
PVIFARACEM FILELTLRSW NHTEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPREDLKD  180
EVVASIPRGN VPVGGPADAL SYCYMPPQHA PSQVGAPGMI IGKPVMDPSM YAQQPHHPYM  240
AQQMWQQQQQ QPDQQQSSSD R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C4e-4185175294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B4e-4185175294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147153RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875195.11e-152PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015875194.11e-152PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015875193.11e-152PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8L4B21e-86NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLW9T3161e-143W9T316_9R
STRINGVIT_14s0128g00250.t011e-130(Vitis vinifera)
STRINGGLYMA19G42460.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.47e-82nuclear factor Y, subunit C9