PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036253.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 235aa    MW: 25387.4 Da    PI: 8.4985
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036253.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.32e-27191061100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk            +lpe++r da++slvyeA+ r+rdPvyG++g+i++lqqq+++
  HL.SW.v1.0.G036253.1  19 PCAACKLLRRRCAEECPFSPYFSPQEPQKFAAVHK------------ELPESQRADAANSLVYEANLRLRDPVYGCMGLISALQQQIQT 95 
                           7********************************96............99**************************************** PP

                DUF260  90 lkaelallkee 100
                           l+ael+++++e
  HL.SW.v1.0.G036253.1  96 LQAELNAVRTE 106
                           ******99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.47218107IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-2619104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRRVQSFGP PGTLNTITPC AACKLLRRRC AEECPFSPYF SPQEPQKFAA VHKELPESQR  60
ADAANSLVYE ANLRLRDPVY GCMGLISALQ QQIQTLQAEL NAVRTEILRY KFREATTNSH  120
NHHIVSSTNT STSTTTTHQA ALANLMSPHH HHNHNNIHQA VVSIASLPSQ LAISHSTLSP  180
GPPHRLPPPS PPPPPPSIVV SASSTTSSST SSLYTSTNTT GYSSISSDNV PYFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-36111143118LOB family transfactor Ramosa2.1
5ly0_B5e-36111143118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874603.11e-74LOB domain-containing protein 13
SwissprotQ9AT613e-59LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A2P5CYR21e-91A0A2P5CYR2_TREOI; Lateral organ boundaries domain containing protein
STRINGXP_008244000.17e-71(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22983486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.12e-60LOB domain-containing protein 13
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]