PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G035058.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 213aa    MW: 24882.1 Da    PI: 4.5996
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G035058.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.99e-2891331128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrF Ptdeel+ ++L +kv   + +  ++i+++d++ ++Pw++  ++ ++ +  yfFsk+ +         +at++gyWk+   +
  HL.SW.v1.0.G035058.1   9 LPPGFRFCPTDEELILQFLYPKVFLIPSTHLNIIPDLDLHLYHPWEFTGTALSSGNMHYFFSKKTE--------DKATSNGYWKEMDIN 89 
                           79***********************99888899**************9665566788899998766........457999********* PP

                   NAM  90 kevlsk.kgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                           ++++++ ++++vg+kk  v++    +++  ++++t+W+m+ey+l
  HL.SW.v1.0.G035058.1  90 EPIFVSgDHNKVGVKKYYVYFvinhHESPTSATETNWIMEEYNL 133
                           ****9977888*********9887656777889*********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-347165IPR003441NAC domain
PROSITE profilePS5100534.3969167IPR003441NAC domain
PfamPF023651.7E-1910133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGDNQGVKLP PGFRFCPTDE ELILQFLYPK VFLIPSTHLN IIPDLDLHLY HPWEFTGTAL  60
SSGNMHYFFS KKTEDKATSN GYWKEMDINE PIFVSGDHNK VGVKKYYVYF VINHHESPTS  120
ATETNWIMEE YNLCNNLEWM STTSPTYKRR RKLKLDFKWV LCRVHERKLD DISLQCIQYE  180
DDDNGTELSC LDEMFLSSLD DDLDEVSMQI LD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-22716815166NO APICAL MERISTEM PROTEIN
1ut4_B6e-22716815166NO APICAL MERISTEM PROTEIN
1ut7_A6e-22716815166NO APICAL MERISTEM PROTEIN
1ut7_B6e-22716815166NO APICAL MERISTEM PROTEIN
3swm_A6e-22716818169NAC domain-containing protein 19
3swm_B6e-22716818169NAC domain-containing protein 19
3swm_C6e-22716818169NAC domain-containing protein 19
3swm_D6e-22716818169NAC domain-containing protein 19
3swp_A6e-22716818169NAC domain-containing protein 19
3swp_B6e-22716818169NAC domain-containing protein 19
3swp_C6e-22716818169NAC domain-containing protein 19
3swp_D6e-22716818169NAC domain-containing protein 19
4dul_A6e-22716815166NAC domain-containing protein 19
4dul_B6e-22716815166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090830.14e-75NAC domain-containing protein 104
TrEMBLA0A2P5E7M91e-109A0A2P5E7M9_TREOI; NAC domain containing protein
STRINGXP_010090830.12e-74(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-45xylem NAC domain 1