PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034838.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family AP2
Protein Properties Length: 621aa    MW: 68976.3 Da    PI: 6.7368
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034838.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.55.9e-12291347155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aaka++ a++k++g
  HL.SW.v1.0.G034838.1 291 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAAKAYDLAALKYWG 347
                           78*******************433.44555535555.779999**************98 PP

2AP246.31.1e-14392441355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  HL.SW.v1.0.G034838.1 392 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 441
                           9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.8E-9291347IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-14291357IPR016177DNA-binding domain
CDDcd000181.89E-18291357No hitNo description
PROSITE profilePS5103217.108292355IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-12292356IPR001471AP2/ERF domain
SMARTSM003802.1E-22292361IPR001471AP2/ERF domain
PRINTSPR003671.5E-6293304IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17390451IPR016177DNA-binding domain
CDDcd000182.69E-25390451No hitNo description
Gene3DG3DSA:3.30.730.102.0E-18391449IPR001471AP2/ERF domain
PROSITE profilePS5103219.137391449IPR001471AP2/ERF domain
SMARTSM003802.1E-34391455IPR001471AP2/ERF domain
PfamPF008472.0E-9392441IPR001471AP2/ERF domain
PRINTSPR003671.5E-6431451IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MKSFKMGEKK TKTSMEMALL ILIIILCLSC PCALMDLFVF PLKINNNNSS NIIMSNWLGF  60
SLTPHLRIHE EFQNGREEDQ NVHGDGFTHP HHHSMSVMPL RSDGSLCVPA QDWRYENPNE  120
EDQGPKLEDF LGCCYSSSHQ DESKVYCQNQ DHHDQNPESM SEIKVDLGSS FNPNSSNGVE  180
MELAIENPTN PSNLIQSYAH YSDNAMYKSW LSQTLPYTNA SEKTTSEADG GGNFQTLSLT  240
MSPSSQNGVG EVSSLQVVTV AAVDGGRKRS GGKSKEPVPR KSIDTFGQRT SQYRGVTRHR  300
WTGRYEAHLW DNSCRKEGQT RKGRQGGYDK EEKAAKAYDL AALKYWGPTT HINFPLSTYE  360
KELEEMTNMT RQEFVANLRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  420
TFSTQEEAAE AYDIAAIKFR GTSAVTNFDI SRYDVKRICS SSKLIASDLA KRNSPKDLSV  480
AVATLNNDFN SRVSSTSSPQ PLLAIESSCE ASDELVDMVW SNSTPPNMDD RHHQPREINS  540
ETNNNTFVGL NGRNSSNPQS PKCSFGPNSS EFGEGGASEF AHAYFMHGSS TSGNKYDQNA  600
NGGNIGLVQQ HAPIFALWNE *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296421e-117KP229642.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF19) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015865623.10.0AP2-like ethylene-responsive transcription factor AIL1 isoform X3
SwissprotQ1PFE11e-132AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2P5ETN80.0A0A2P5ETN8_TREOI; AP2/ERF transcription factor
STRINGXP_010107987.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-111AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]