PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G033230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 348aa    MW: 38487.1 Da    PI: 7.7095
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G033230.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058146168123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C+ C++sF++   L  H  +H
  HL.SW.v1.0.G033230.1 146 YECKTCNRSFPSFQALGGHRASH 168
                           99**********99999998887 PP

2zf-C2H213.10.00028242264123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++Cg  F++   L  H+r+H
  HL.SW.v1.0.G033230.1 242 HECSICGSEFTSGQALGGHMRRH 264
                           78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.81E-5145174No hitNo description
PfamPF139122.5E-13145170IPR007087Zinc finger, C2H2
SMARTSM003550.06146168IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388146173IPR007087Zinc finger, C2H2
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
SuperFamilySSF576677.83E-6239267No hitNo description
PfamPF139123.4E-11241266IPR007087Zinc finger, C2H2
SMARTSM003550.019242264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388242269IPR007087Zinc finger, C2H2
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEEVEVVVSH EQDHNNHNHH QQQMNILMKG KRTKRQRQPS SPLTATATAT ATAAASTSSS  60
SANYSFSSPT TSSAGGGGGG GGGGESTTTD QEEEQDMANC LILLAQGDHL RRRHRRRHRR  120
KETPLLTATT TTTVTPSNDT KGFYVYECKT CNRSFPSFQA LGGHRASHKK PKLFSDDKKS  180
LHPISTAAAA EEFYEEDQEV VEDDPNPHPH PHPLPHHHHH QEVLVFNKTT TSFNNKQANK  240
VHECSICGSE FTSGQALGGH MRRHRAHNSS STTTIATTNN SSSFHSLPQH PNKVQRNILS  300
LDLNLPAPEE DHNHNHHHHH HRESKFQFAP TQQALVFSAP ALVDCHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119RRHRRRHRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-46C2H2 family protein