PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G032995.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 538aa    MW: 58520.6 Da    PI: 5.901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G032995.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11353395754
                           HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  HL.SW.v1.0.G032995.1 353 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 395
                           79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16349415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9352395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-15353408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.72E-13353399No hitNo description
CDDcd048731.09E-7466526No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MLPRSNGAVW IDGDEEDAAS WTKNNEGVEP NKEEEMGMGG SFSSFKTMLE SDWYMNNALN  60
PPAQDHHNFH GLPPPNHHDI RDISFCNNPA TDHNLLLQPI DSSASCSPSH AFALDPAHSH  120
HFLPPKSCFS SLLNVVNTNP FDNGFDLSCE GGFLNSFQPN QASNSPVLMG FSGLNSQQPQ  180
MGTPELSSSS EFPGTRLLPL SDDATALGGG FSPTGFEGFD GSGGALFLNN RAKVLRPLEV  240
FPPVGAQPTL FQKRAALRQN SGGADKLGNL DISTSRFGKS LESLDKKRKK SDDGEIEESI  300
DVSGLNYDSD DANEYSKLEE NTKNGGSNSN ANSTVTGGDQ KGKKKGLPAK NLMAERRRRK  360
KLNDRLYMLR SVVPKISKMD RASILGDAID YLKELLQRIN DLHNELESTP PGSLLPPSSS  420
FHPLTPTPPT LPCRVKEELF PGSLPSPKNQ PARVEVRLRE GRAVNIHMFC ARRPGLLLST  480
MRALDNLGLD IQQAVISCFN GFALDVFRAE QCREGQEVLP EQIKAVLLDS AGFHGTI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285289KKRKK
2342360KKKGLPAKNLMAERRRRKK
3354361ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231033.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-170ICE1_ARATH; Transcription factor ICE1
TrEMBLS4WVT00.0S4WVT0_9R
STRINGVIT_14s0068g01200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-151bHLH family protein