PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G030527.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family TCP
Protein Properties Length: 525aa    MW: 56935.8 Da    PI: 7.9867
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G030527.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.12.3e-36882622134
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................... 65 
                            g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LGfd++sk++eWL+++a  ai el+++                         
  HL.SW.v1.0.G030527.1  88 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGFDQPSKAVEWLINAASDAIAELPSLsssfpdtpkqlsdekrasvgteqgf 176
                           689*************************************************************9999999999999999999888877 PP

                   TCP  66 ..............ssssasec.....eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmr 131
                                         +            ++++++++++n++++ + +++a+s+ s++s+ s l+l++      r kar+rarer ++++ 
  HL.SW.v1.0.G030527.1 177 dsaevemdgtdqgmN------YqnhqdQQQQNQNQNQNQQHNLSLSKSACSSTSETSKGSGLSLSRsdirVNRVKARERARERAAKEKE 259
                           777776664433221......12121334444444444444566666667777777777777777753445669********7777666 PP

                   TCP 132 ikn 134
                           ++n
  HL.SW.v1.0.G030527.1 260 KEN 262
                           554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.7E-4289260IPR005333Transcription factor, TCP
PROSITE profilePS5136931.70190148IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.946240258IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MEVEEIQAQA CKYSRIGNGR SDSSNIKLLG QKGGNDHYPD DEVDGREIKR VAGGGGAADL  60
SVINAGGGAN RLRGWHHSSR IIRVSRASGG KDRHSKVWTS KGLRDRRVRL SVTTAIQFYD  120
LQDRLGFDQP SKAVEWLINA ASDAIAELPS LSSSFPDTPK QLSDEKRASV GTEQGFDSAE  180
VEMDGTDQGM NYQNHQDQQQ QNQNQNQNQQ HNLSLSKSAC SSTSETSKGS GLSLSRSDIR  240
VNRVKARERA RERAAKEKEK ENESRIVHRS SSHHHNNSNN INSISQNSTF TELLTAGMSN  300
VNDNNTSSPT QQNPGATGGG GGAHMDYFAS GLLGLSSSSS RAQQQQQHHQ SSGFSGQIHL  360
GNSLPSQTMS MSMSMSPFGD HHNHHQHQNH NNGDQTVLPQ HFSFVPEHLI PVATSQPNGN  420
GGDYNLNFSI SSGLAGFNRG TLQSNSPSLL PHFQRFSPID GTNNVPFFIG AAAPAAAAPP  480
MENHHHSNHN HHHQFSAGFV DGRLQLCYGD GNRHSDQQKG KGKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2295149155Putative transcription factor PCF6
5zkt_B1e-2295149155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875888.10.0transcription factor TCP2
RefseqXP_015875894.10.0transcription factor TCP2
RefseqXP_015875904.10.0transcription factor TCP2
TrEMBLA0A2P5EA210.0A0A2P5EA21_TREOI; TCP transcription factor
STRINGEOY276510.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.26e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2