PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028482.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family AP2
Protein Properties Length: 493aa    MW: 54157.6 Da    PI: 6.6958
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028482.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.6e-17147196155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  HL.SW.v1.0.G028482.1 147 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 196
                           78*******************......55***********************9997 PP

2AP241.53.4e-13239289155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV+ +k  grW+A+   +    +  k+++lg f+++ eAa+a+++a+ k +g
  HL.SW.v1.0.G028482.1 239 SKYRGVTLHK-CGRWEARMGQF----MGkKYIYLGLFDSEVEAARAYDKAAIKCNG 289
                           89********.7******5554....224**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16147206IPR016177DNA-binding domain
PfamPF008471.2E-8147196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-17148204IPR001471AP2/ERF domain
CDDcd000183.06E-11148206No hitNo description
SMARTSM003802.6E-31148210IPR001471AP2/ERF domain
PROSITE profilePS5103217.543148204IPR001471AP2/ERF domain
CDDcd000182.74E-26239299No hitNo description
PfamPF008478.1E-9239289IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-17239298IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-15240297IPR001471AP2/ERF domain
PROSITE profilePS5103215.435240297IPR001471AP2/ERF domain
SMARTSM003802.6E-33240303IPR001471AP2/ERF domain
PRINTSPR003675.1E-6241252IPR001471AP2/ERF domain
PRINTSPR003675.1E-6279299IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MLDLNLNVVL SSDSAASDSV DNKLLESSGS FNSSSNLTTA DDDSSSNLDA TASLFGYSFE  60
ILNNHRNDDA DVSTTNEDDD HRSCFARSIE LFPVASNNTK SSGSRRQWLG LSCSEGTYGG  120
PAEQGIAPQQ QNKQVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA  180
HAAARAYDRA AVKFRGLEAD INFNISDYDE DIKHMSSFSK EEFVHILRRQ STGFSRGSSK  240
YRGVTLHKCG RWEARMGQFM GKKYIYLGLF DSEVEAARAY DKAAIKCNGR EAVTNFDPSS  300
YDGEIMMSEA DYEGSNQNLD LNLGIAPLSI SNAEASDVYF KQGYSDIPVF TRDKNENFAS  360
VGATLPHHGS RMISEHHHSS IMSGINSNFF PNHMERAIEK GVDVNSLVPN WAWQIQGPNG  420
RAAVLPPPVP LFSTAASSGF PSSTTSASPS SLAAATTQPH FPNNASNILH HHFIPPSSIT  480
TTNNLPHFYC RT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239108.11e-171PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotQ8H4431e-104AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A2P5A7F50.0A0A2P5A7F5_PARAD; AP2/ERF transcription factor
STRINGXP_008239108.11e-171(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.37e-95related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]