PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G027722.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family TCP
Protein Properties Length: 438aa    MW: 46329.8 Da    PI: 8.1676
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G027722.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.39.2e-37621782116
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 
                           ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++  + s +ss+s+ s++ 
  HL.SW.v1.0.G027722.1  62 PPKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSMSAPs 150
                           789******************************************************************99987778888877666664 PP

                   TCP  89 .......kaaksaakskksqksaasalnlakesra 116
                                  +       ++ +   aa+a+++ + +++
  HL.SW.v1.0.G027722.1 151 yfrssyfN-------PNYNYGAAAAASQFIRTTSS 178
                           44333340.......44444444444444443332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.4E-3766261IPR005333Transcription factor, TCP
PROSITE profilePS5136927.21868122IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEAENGIRRP NFPLQLLEKK EEEQACSNSG YTPLAITSVS SDSNRPGSSG ALQATEASKK  60
APPKRTSTKD RHTKVDGRGR RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPSVI  120
AATGTGTIPA NFTSLNISLR SSGSSMSAPS YFRSSYFNPN YNYGAAAAAS QFIRTTSSGA  180
EWERSASTVI MDESQQRRAL FSGGIGLLTS SQVNSSTSSS PMMLNFASGN VSAMMQTKQE  240
LHHEAASNLE QGEGTGQRKR RAGPEEDLSS PQSSTQNLVN NNSNNNNGYL LQSSSGSVQA  300
SHNNPMPAAF WMLPNNSASN SNHIATAAGG GSQNHHDPMW TFPTASSTTT SNMYRGAPIT  360
SGLHFMNFPP VALLPGQQIG SGTGGGDSHS HLGMLAALNA YRPILNGGAT ESPVTGSHQH  420
HGGDDGHDNT CSTTSHR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258392.11e-132PREDICTED: transcription factor TCP14
TrEMBLA0A2P5DAS80.0A0A2P5DAS8_PARAD; TCP transcription factor
STRINGXP_010258392.11e-132(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.16e-45TCP family protein