PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G027235.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 202aa    MW: 22964.4 Da    PI: 5.3149
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G027235.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.52.6e-3691331128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrF Ptdeelvv++L++kv+  +++  +vi+++++y ++Pw+L+ k+ +e+++wyf+s++         +nr+t++gyWka g +
  HL.SW.v1.0.G027235.1   9 LPPGFRFYPTDEELVVHFLHRKVSLLPCHP-DVIPDLELYPYDPWELDGKALGEDNKWYFYSRKT--------QNRVTRNGYWKALGIE 88 
                           79*************************999.99**************977778999*****9974........5899************ PP

                   NAM  90 kevlsk.kgelvglkktLvfykgrapkge.....ktdWvmheyrl 128
                           ++v  + ++++vg+kk +vfy g+a++ +     kt+W+mhe++l
  HL.SW.v1.0.G027235.1  89 EAVSGNnNTKKVGTKKYFVFYVGEAHNHNsgaaiKTNWIMHEFHL 133
                           ***98867888**********6554443333455*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-466171IPR003441NAC domain
PROSITE profilePS5100544.0839172IPR003441NAC domain
PfamPF023652.8E-2410133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGDNNNVNLP PGFRFYPTDE ELVVHFLHRK VSLLPCHPDV IPDLELYPYD PWELDGKALG  60
EDNKWYFYSR KTQNRVTRNG YWKALGIEEA VSGNNNTKKV GTKKYFVFYV GEAHNHNSGA  120
AIKTNWIMHE FHLSDSASTS SSSSSSSTRS SKRRSSNKID CSKWVLCRVY ERDDDDDGTE  180
LSCLDEVFLS LDDLDEISLP N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-37517313166NO APICAL MERISTEM PROTEIN
1ut4_B2e-37517313166NO APICAL MERISTEM PROTEIN
1ut7_A2e-37517313166NO APICAL MERISTEM PROTEIN
1ut7_B2e-37517313166NO APICAL MERISTEM PROTEIN
3swm_A2e-37517316169NAC domain-containing protein 19
3swm_B2e-37517316169NAC domain-containing protein 19
3swm_C2e-37517316169NAC domain-containing protein 19
3swm_D2e-37517316169NAC domain-containing protein 19
3swp_A2e-37517316169NAC domain-containing protein 19
3swp_B2e-37517316169NAC domain-containing protein 19
3swp_C2e-37517316169NAC domain-containing protein 19
3swp_D2e-37517316169NAC domain-containing protein 19
4dul_A2e-37517313166NAC domain-containing protein 19
4dul_B2e-37517313166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103879.11e-108NAC domain-containing protein 104 isoform X1
SwissprotQ8GWK64e-82NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2P5EXE31e-117A0A2P5EXE3_TREOI; NAC domain containing protein
STRINGXP_010103879.11e-107(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-74xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]