PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G025794.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family AP2
Protein Properties Length: 410aa    MW: 46194.5 Da    PI: 8.6764
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G025794.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.6e-1275131155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k++g
  HL.SW.v1.0.G025794.1  75 SKYRGVSRHRWTGRYEAHLWDkLSWNVtqKKKGKQ-GAYDEEESAARAYDLAALKYWG 131
                           89*******************88887784446666.9*******************98 PP

2AP252.31.4e-16174225155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  HL.SW.v1.0.G025794.1 174 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 225
                           89****99**********99966...3.6*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.82E-1575141IPR016177DNA-binding domain
CDDcd000184.35E-1875141No hitNo description
PfamPF008473.7E-975131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-1376140IPR001471AP2/ERF domain
SMARTSM003806.6E-1976145IPR001471AP2/ERF domain
PROSITE profilePS5103218.3676139IPR001471AP2/ERF domain
PRINTSPR003679.4E-67788IPR001471AP2/ERF domain
CDDcd000183.25E-25174235No hitNo description
PfamPF008475.2E-12174225IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18174235IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-18175234IPR001471AP2/ERF domain
SMARTSM003802.7E-26175239IPR001471AP2/ERF domain
PROSITE profilePS5103218.953175233IPR001471AP2/ERF domain
PRINTSPR003679.4E-6215235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MKPMMVKSEN NQNCSPRRRR VSMADGEAEA ALRCVKRRRR DIPTEVVTCD DNKPQQQAQA  60
DDQASPATTT VKRSSKYRGV SRHRWTGRYE AHLWDKLSWN VTQKKKGKQG AYDEEESAAR  120
AYDLAALKYW GTSTFTNFPI SDYEKEIEIM LTVTKEEYLA TLRRKSSGFS RGVSKYRGVA  180
RHHHNGRWEA RIGRVFGNKY LYLGTYSTQE EAARAYDIAA IEYRGINAVT NFDLSTYIRW  240
LKPEAASNPV GGCESLPEVM TEPQTLRSTT NYGAPTDQDQ FPSTNPFMKS DNDYLNKYSP  300
TPPKQQVVIQ NKSPLIGSNL TRSKSSPTAL SLLLRSSMFR DLVEKNSNVS EYETDGDEPK  360
NQLQGGCSSD DDEYGGFFFD GISDIPFVCG SNRSDGMQLG QEKGIQFVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11739RRRVSMADGEAEAALRCVKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879418.11e-180AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A2P5AFV30.0A0A2P5AFV3_PARAD; AP2/ERF transcription factor
STRINGXP_010112091.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-88AP2 family protein