PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G024424.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 228aa    MW: 24774 Da    PI: 7.8322
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G024424.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.43.4e-312103197
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C+vlr++C+++C+l++++     p++q++++ +v+k+FG++ ++++++a+p+++r+++++sl+yeA  r+ +Pv+Gavg+++ ++
  HL.SW.v1.0.G024424.1   2 SCNGCRVLRKGCSDNCMLRECLqwietPQAQAHATLFVAKFFGRAGLMSFISAVPQHQRPALFQSLLYEAVGRTVNPVNGAVGLLWMGN 90 
                           6**************************************************************************************** PP

                DUF260  85 qqleqlkaelall 97 
                           ++++q+++e++l+
  HL.SW.v1.0.G024424.1  91 WHVCQAAVETVLR 103
                           *******998875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.1651107IPR004883Lateral organ boundaries, LOB
PfamPF031957.4E-272101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDNCMLR ECLQWIETPQ AQAHATLFVA KFFGRAGLMS FISAVPQHQR  60
PALFQSLLYE AVGRTVNPVN GAVGLLWMGN WHVCQAAVET VLRGGVLGPL SESAHDNNNA  120
ASSDHPSVSR RLWPKKRPSS STTTATFDES IHDHDRHAAD PYVLSPSDLD LCLMAAGTKM  180
VEKRRAVTPT SEEESETTTL NSSSVDSSTF LGDGGSHKRS KLLRLFM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007199277.11e-79LOB domain-containing protein 38
RefseqXP_021832795.11e-79LOB domain-containing protein 38-like
SwissprotQ9FN112e-67LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A2P5DNE71e-102A0A2P5DNE7_PARAD; Lateral organ boundaries domain containing protein
STRINGEMJ004765e-79(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.15e-69LOB domain-containing protein 39
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]