PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G024418.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 261aa    MW: 28631.7 Da    PI: 8.6321
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G024418.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601118.5e-3520112192
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           aCaaCk++r+kC ++C+lapyfpae++++f++vhk+FG+snv+k++k++  +e+r++a++slv+eA++r++dPv G ++ ++k+  +l+
  HL.SW.v1.0.G024418.1  20 ACAACKHQRKKCHEGCILAPYFPAERSREFQAVHKVFGVSNVTKMVKNVvTDEDRRKAVDSLVWEACCRQKDPVLGPYAEYRKVYDELK 108
                           7***********************************************966777*****************************999998 PP

                DUF260  89 qlka 92 
                             k+
  HL.SW.v1.0.G024418.1 109 IYKS 112
                           7765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.59319121IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3320111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MQRNVTTTTS AGATAAAQPA CAACKHQRKK CHEGCILAPY FPAERSREFQ AVHKVFGVSN  60
VTKMVKNVVT DEDRRKAVDS LVWEACCRQK DPVLGPYAEY RKVYDELKIY KSHEINQRTT  120
ASAYKSLSGL VGWNSTSSGV STNGNNNING QNGMVNGIVN SSNSLSYNFH DNGNVIVDQS  180
PFSCYSSSNY GQSNPEKIRQ LEKNTSTTTA TTVDSVVPVV LQQHQQQYSI GGFNQQYYLS  240
GQFNQVNTKT IESTIWEGGS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-21795485LOB family transfactor Ramosa2.1
5ly0_B1e-21795485LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023380.11e-113LOB domain-containing protein 2
SwissprotQ9LNB91e-44LBD2_ARATH; LOB domain-containing protein 2
TrEMBLA0A2P5E7R61e-135A0A2P5E7R6_TREOI; Lateral organ boundaries domain containing protein
STRINGXP_008377048.13e-74(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-40LOB domain-containing protein 2