PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022486.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family TCP
Protein Properties Length: 427aa    MW: 46965.3 Da    PI: 6.2335
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022486.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1042.5e-32571983105
                   TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssas 71 
                           g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i+el+ +                          
  HL.SW.v1.0.G022486.1  57 GGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLpmppsgnfslltprgleansA----- 140
                           78*************************************************************444444444444443332221..... PP

                   TCP  72 ec.eaesssssasnsssg...........................................kaaksaakskksqksaa 105
                            +   ++s+s+      +                                           +            k+ a
  HL.SW.v1.0.G022486.1 141 -AiA-ANSQSN------EhqegfkinndsnewdcssrlpgsnfwsnsttnnsssdvlwrgkS------------KEVA 198
                           .111.111111......112223344444557666666666665555543333333333220............2222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.22958116IPR017887Transcription factor TCP subgroup
PfamPF036344.6E-3058226IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MIENSKDSSS DFPPREDDQG NEGKITKASC SIPNNTSSTP WLRLKDPRIV RVSRVFGGKD  60
RHSKVCTIRG LRDRRVRLSV PTAIQLYDLQ DRLGLNQPSK VVDWLLNAAK DEIDELPPLP  120
MPPSGNFSLL TPRGLEANSA AIAANSQSNE HQEGFKINND SNEWDCSSRL PGSNFWSNST  180
TNNSSSDVLW RGKSKEVARN PSAAANGEKE NWRSSRINEV EKEEVEEEEE EGEANNDDEG  240
PNNLFQRQNV TSHPFFPGMM NNAIPNGYRW EPQNYPLSFL GGGGGGGGGG SSHGFTSQTD  300
HLQNLNVMSL QSSTLSLSTG SQFLVCPPGN TITQTYFPTS TTASHHPHQH HQAAEIDPRL  360
QVHHFHQMFS SNPQSGLLPN DMQPNNSNNT QPMRAAPLHF STTSSGSNKL VHFSPNDTRG  420
SQQNKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1863117155Putative transcription factor PCF6
5zkt_B1e-1863117155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089649.11e-119transcription factor TCP13
TrEMBLA0A2P5DK131e-154A0A2P5DK13_TREOI; TCP transcription factor
STRINGXP_010089649.11e-119(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-47plastid transcription factor 1