PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 169aa    MW: 18700.5 Da    PI: 8.9467
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020540.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-202778256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          +y+GVr+++ +g+++AeIrdps +g  +r +lg+f+taeeAa+a+++a+ +++g+
  HL.SW.v1.0.G020540.1 27 KYRGVRRRP-WGKFAAEIRDPSRQG--ARLWLGTFDTAEEAARAYDRAAFNFRGH 78
                          8********.**********96543..*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.62E-242786IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-322787IPR001471AP2/ERF domain
PfamPF008473.7E-152778IPR001471AP2/ERF domain
PROSITE profilePS5103225.2912785IPR001471AP2/ERF domain
SMARTSM003801.0E-372791IPR001471AP2/ERF domain
CDDcd000182.67E-312786No hitNo description
PRINTSPR003671.1E-112839IPR001471AP2/ERF domain
PRINTSPR003671.1E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MEDPNDYNSK RSHEQQQQGS KEDPQVKYRG VRRRPWGKFA AEIRDPSRQG ARLWLGTFDT  60
AEEAARAYDR AAFNFRGHLA ILNFPNEYYS RVMGSPPYPP HITFSSTHSA GSSSSSSGPC  120
QGSGSSGAGA GAGMGMSGRR QERQVFEFEY LDDKVLEELL GSEKDKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-312715514114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093427.13e-69ethylene-responsive transcription factor ERF098
SwissprotQ9LTC56e-51ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLW9R4276e-68W9R427_9ROSA; Ethylene-responsive transcription factor
STRINGXP_010093427.11e-68(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.15e-41ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]