PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018820.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 538aa    MW: 59856 Da    PI: 6.727
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018820.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS253.58.2e-781515292374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevs 88 
                           ++lL  cA+a+++g+  ++q+lL  l+elas +gd+++Rla++ ++AL ++l++  s+++ ++ + + + s+ +     ++l  fsevs
  HL.SW.v1.0.G018820.1 151 EQLLNPCATAITEGNCMRVQHLLYVLHELASLSGDANHRLAFHGLRALTHHLSSsgSSPSFSAPVGSVTFSSAEPRFFQKSLIKFSEVS 239
                           689**************************************************9444455555556666665555555555555***** PP

                  GRAS  89 PilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg......skeeleetgerLa 166
                           P++ f + +aN+ Il+ +++e    + +Hi+D+++s+G+QWp Ll+aL+ R+ ++pp +RiT ++  +++      +  +  +   rL 
  HL.SW.v1.0.G018820.1 240 PWFAFPNNIANSCILQLLSEEndrtRSLHILDIGVSHGVQWPILLEALSRRSgGPPPLVRITIIAGTDQNndtpfsKGPQGDNFSTRLL 328
                           ******************9998777889************************55666*****9988666677899889999******** PP

                  GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nses 252
                            fA+++++++e+n l  + l++l+ + ++ +++E+l+V+ +++lh+l    +++++er+e+Lk++++++Pk ++++e++  +++ n ++
  HL.SW.v1.0.G018820.1 329 CFAKSININLEINRLDNQPLQNLNAQIINSSEDETLIVCAQFRLHHLN---HNTPDERTEFLKTMRKMEPKGIILSEKNieCSCsNCGN 414
                           **************9999*****************************8...77777889******************98445567889* PP

                  GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                           F+ +f++ +ey + +++s+++ +    + r + Er+l++ e+ + ++++g++    +e +ekW er++ aGF    l+e+a +  ++ll
  HL.SW.v1.0.G018820.1 415 FASGFSRQVEYLWRFLESTSSAF----KGRESEERRLMEGEAAKGLTNRGEM----NEGKEKWCERMRGAGFVGEGLGEEAIDGGRALL 495
                           *******************7775....7777788888888899999999988....9******************************** PP

                  GRAS 342 rkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           rk++ ++++rvee++g + l Wk++p+ ++S W+
  HL.SW.v1.0.G018820.1 496 RKYDsNWEMRVEEKDGFVGLWWKGQPVSFCSLWK 529
                           ****9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.587124508IPR005202Transcription factor GRAS
PfamPF035142.8E-75151529IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MDWLEDSVSF LPSFLDDPYH SAEINGYPWW VESQDIGHDL IHTINTSVYS PSATAIATTT  60
SPPNSTISNH LLLPNSSRKR KSVDGPIPET SQYHHNPRRN HGRQTNQAED GNAAVEEVVA  120
IRKPVGNKRN SAKAAGYNCN NGNNKEGRWA EQLLNPCATA ITEGNCMRVQ HLLYVLHELA  180
SLSGDANHRL AFHGLRALTH HLSSSGSSPS FSAPVGSVTF SSAEPRFFQK SLIKFSEVSP  240
WFAFPNNIAN SCILQLLSEE NDRTRSLHIL DIGVSHGVQW PILLEALSRR SGGPPPLVRI  300
TIIAGTDQNN DTPFSKGPQG DNFSTRLLCF AKSININLEI NRLDNQPLQN LNAQIINSSE  360
DETLIVCAQF RLHHLNHNTP DERTEFLKTM RKMEPKGIIL SEKNIECSCS NCGNFASGFS  420
RQVEYLWRFL ESTSSAFKGR ESEERRLMEG EAAKGLTNRG EMNEGKEKWC ERMRGAGFVG  480
EGLGEEAIDG GRALLRKYDS NWEMRVEEKD GFVGLWWKGQ PVSFCSLWKL NVEGGHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-3814752984473Protein SHORT-ROOT
5b3h_B2e-3814752930419Protein SHORT-ROOT
5b3h_E2e-3814752930419Protein SHORT-ROOT
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086812.10.0nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A2P5ETQ90.0A0A2P5ETQ9_TREOI; GRAS transcription factor
STRINGXP_010086812.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-167GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]