PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 183aa    MW: 20747.8 Da    PI: 6.3984
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018100.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-162071256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          +y+G+r+++  g+++AeIrdp++ng  +r +lg+f tae Aa+a+++a+  ++g+
  HL.SW.v1.0.G018100.1 20 QYRGIRRRP-GGKFAAEIRDPTKNG--ARQWLGTFETAEAAARAYDRAAFGFRGH 71
                          69*******.9**********9998..**********************988886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.23E-142079No hitNo description
SMARTSM003806.6E-322084IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-282080IPR001471AP2/ERF domain
PROSITE profilePS5103223.4992078IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-212079IPR016177DNA-binding domain
PfamPF008476.6E-102171IPR001471AP2/ERF domain
PRINTSPR003671.8E-82132IPR001471AP2/ERF domain
PRINTSPR003671.8E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEGKRKIVIK ETTKGRDLGQ YRGIRRRPGG KFAAEIRDPT KNGARQWLGT FETAEAAARA  60
YDRAAFGFRG HLAILNFPNE YHDYSHDQNQ QPHPLYDDAY SIKSLGSETS SLSSTTTHCA  120
AAAVTGIERR SNYNVGEVIE IECFDNTLLE DLLINSQDYY YNYVDRLDDD DHEDRHKKPR  180
IG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-251582976Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016441045.12e-42PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC56e-35ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2P5CNM24e-42A0A2P5CNM2_PARAD; AP2/ERF transcription factor
STRINGXP_009780511.11e-40(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.16e-18ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]