PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018099.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 152aa    MW: 16751.2 Da    PI: 7.6714
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018099.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-201567156
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          ++y+G+r+++ +g+++AeIrdps+ng  +r +lg+f taeeAa+a+++a+ +++g+
  HL.SW.v1.0.G018099.1 15 TRYRGIRRRP-WGKFAAEIRDPSKNG--ARLWLGTFETAEEAARAYDRAAFAFRGH 67
                          68********.***********9998..*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-141567IPR001471AP2/ERF domain
CDDcd000181.36E-281575No hitNo description
SuperFamilySSF541711.77E-231675IPR016177DNA-binding domain
SMARTSM003805.2E-391680IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-311675IPR001471AP2/ERF domain
PROSITE profilePS5103225.0271674IPR001471AP2/ERF domain
PRINTSPR003671.7E-111728IPR001471AP2/ERF domain
PRINTSPR003671.7E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEGQRAENEN KGRDTRYRGI RRRPWGKFAA EIRDPSKNGA RLWLGTFETA EEAARAYDRA  60
AFAFRGHLAI LNFPNEFQHQ NSHHNFSSSS SSSSSVSAAH GRGGHGQSYD FGSFQSGQGS  120
SGCASGVIEF EYLDDKLLED LLDCESRQGK K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-291774663ATERF1
3gcc_A4e-291774663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031496.19e-55ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC56e-44ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2P5CNK94e-58A0A2P5CNK9_PARAD; AP2/ERF transcription factor
STRINGXP_008235691.13e-49(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.15e-21ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]