PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017639.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HSF
Protein Properties Length: 377aa    MW: 41361.8 Da    PI: 6.248
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017639.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.5e-35151062102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           F++k+y++++d+ +++lisw + +nsf+v+++ +f++k+Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+
  HL.SW.v1.0.G017639.1  15 FVMKTYQMVNDPMTDSLISWGHANNSFIVVEPLDFSQKILPAFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANECFLRGQ 94 
                           9********************999*****************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k+ll++i rkk+
  HL.SW.v1.0.G017639.1  95 KHLLKNITRKKH 106
                           *********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.4E-5411104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.9E-3712104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.58E-3412104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-171538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.1E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-175365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-176678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGMEATTSNN VIAPFVMKTY QMVNDPMTDS LISWGHANNS FIVVEPLDFS QKILPAFFKH  60
NNFSSFVRQL NTYGFRKVDP DRWEFANECF LRGQKHLLKN ITRKKHCNSG SSSSSGNRGV  120
PSHTFSASKQ LDSTELDDEE IVMEIARLKQ EQRTLEEELQ GMTKRLETTE RRPQQMMAFL  180
YKVVEDPDIL PRIMNQNKHH LTEKKRRLAI SSATSSNSSG GGGTAPTTAA GTSANNSLKT  240
EDEDEVVASE AGFELESFYH FNQSSSSSPE NPPSRWGDQR ADRFISHDGY YNGFPTINPN  300
SMSAVSSGRV ADSMSVMTSS SMPAPARFVS GYGNGSSSNS NSGQIGYFTG VVAGMESSNP  360
DPAPPPYPFS LFGGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-26110416129Heat shock factor protein 1
5d5v_B6e-26110416129Heat shock factor protein 1
5d5v_D6e-26110416129Heat shock factor protein 1
5hdg_A6e-26121047110Heat shock factor protein 1
5hdn_A6e-26121047110Heat shock factor protein 1
5hdn_B6e-26121047110Heat shock factor protein 1
5hdn_C6e-26121047110Heat shock factor protein 1
5hdn_D6e-26121047110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898330.11e-121heat stress transcription factor C-1
SwissprotQ9LV523e-86HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A2P5CC581e-171A0A2P5CC58_PARAD; Heat shock transcription factor
STRINGXP_010088821.11e-116(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-86heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]