PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G016895.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family TCP
Protein Properties Length: 401aa    MW: 41605.3 Da    PI: 9.7384
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G016895.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.78.4e-421632712116
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgk 89 
                           a+ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s+     
  HL.SW.v1.0.G016895.1 163 APVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTL---- 247
                           7789*****************************************************************9997777777777633.... PP

                   TCP  90 aaksaakskksqksaasalnlakesra 116
                              sa++sk++++s +sal+la+++++
  HL.SW.v1.0.G016895.1 248 ---SAPPSKSAPHSFHSALALAHHHQS 271
                           ...333555555555555666665543 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.3E-40168294IPR005333Transcription factor, TCP
PROSITE profilePS5136928.496169223IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDLADLQSNN KNNNKVQQQQ HQQKQSSSSS SPSSHQFVVP FDGRSSTNSP FMGSISIQAG  60
LTHGHGATNT TSSTSTTALP SSSSSSSSGP TSSSSSSSSS TSTSTTTTAP PPPPHLVDAS  120
LAIATRSDSL PFNNPAPLSV DYSAKKNQQQ SIVPAATATA VAAPVKRSTK DRHTKVDGRG  180
RRIRMPATCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI IAATGTGTIP ANFSTLNISL  240
RSSGSTLSAP PSKSAPHSFH SALALAHHHQ SHYDEGFAHA GLMGFHHQQH HHQQPPLMTA  300
DQIAEALPSG GDNGGDSSEN YMRKRFREDL FKENSDTQGD QSGGGGSPSS NNNKSFKSSG  360
GGGGGGGGGG LQLPKQQPQD GSGSSGLLRP SNILPATAMW A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018835543.11e-128PREDICTED: transcription factor TCP8-like
TrEMBLA0A2P5BJ321e-145A0A2P5BJ32_PARAD; TCP transcription factor
STRINGcassava4.1_034188m1e-112(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-53TCP family protein