PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G016047.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 264aa    MW: 29453.5 Da    PI: 6.7522
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G016047.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.35.9e-3971071100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC ++C++apyf++eq +++fa++hk+FGasnv+kll++lp ++r+ a+ ++ yeA+ar++dP+yG+v++i++lqqq+ 
  HL.SW.v1.0.G016047.1   7 PCGACKFLRRKCIRGCIFAPYFCHEQgASHFAAIHKVFGASNVSKLLTHLPVSDRPGAAVTISYEAQARLKDPIYGCVSHIFALQQQVI 95 
                           7*************************89************************************************************* PP

                DUF260  89 qlkaelallkee 100
                           +l+a+la++ke+
  HL.SW.v1.0.G016047.1  96 NLQAQLASIKEQ 107
                           *******99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.6786108IPR004883Lateral organ boundaries, LOB
PfamPF031958.4E-377105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCIR GCIFAPYFCH EQGASHFAAI HKVFGASNVS KLLTHLPVSD  60
RPGAAVTISY EAQARLKDPI YGCVSHIFAL QQQVINLQAQ LASIKEQAAQ NFGNSSGSDS  120
GNPNEKYIKE VQNWFQSETN MMMTMPQFNP NMVTSETYNA SHAMPYTENK PAPLNSNSGG  180
SSSCENSMFG SEENNNDQFY NQNHSNSNNM GRFDEAYHYM SSLDSLQQGL NRQMDFQDYS  240
DDLHLHHHHH HHESVPFSYT RHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3531017104LOB family transfactor Ramosa2.1
5ly0_B1e-3531017104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111895.11e-107LOB domain-containing protein 29
TrEMBLA0A2P5CNF81e-121A0A2P5CNF8_PARAD; Lateral organ boundaries domain containing protein
STRINGXP_010111895.11e-107(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35713366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-64lateral organ boundaries-domain 29