PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015741.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family TCP
Protein Properties Length: 424aa    MW: 44786.9 Da    PI: 6.7428
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015741.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.82e-3450148289
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssa 82 
                           +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++        +       ++++s+++ 
  HL.SW.v1.0.G015741.1  50 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDELpawnpmtsC-------QPVASENAP 131
                           79**************************************************************544444441.......444444444 PP

                   TCP  83 snsssg..........k 89 
                           + ++++           
  HL.SW.v1.0.G015741.1 132 AVDTIAsvsrrnsssvT 148
                           43333322222221221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3050175IPR005333Transcription factor, TCP
PROSITE profilePS5136934.29552110IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MGDYPPPPTT HQNQVAPITS SRLGIRGGGG GGGCGGEIVE VQGGHIVRST GRKDRHSKVC  60
TAKGPRDRRV RLSAHTAIQF YDVQDRLGYD RPSKAVDWLI KKAKAAIDEL DELPAWNPMT  120
SCQPVASENA PAVDTIASVS RRNSSSVTAA AATATAEAMV GDGALNLQSQ NHMVDHSNSG  180
GFLPPSLDSD AIADTIKSFF SGSSSSSSPS TTSYAAANDS ISSELPTRFA DPILLHHQQQ  240
QHQAHQNEQA LYSGTTGFVG WSDHHHHHQS PAELSRLQRI VAWNGGGDTT TGHNNGGNND  300
GSSNTTGGGE SLGFIFNSLP VVQAPSPPLQ PFFGRSNHQF FTQRGPLQSS NTPSVRAWID  360
SSSSISMADH HNQQYSSMPP AAMGFISGSG FSPGFHIPAR IQGEEEHDGI SEKPSSASSD  420
SRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2157110154Putative transcription factor PCF6
5zkt_B8e-2157110154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018849844.11e-122PREDICTED: transcription factor TCP4-like
TrEMBLA0A2P5BA701e-126A0A2P5BA70_PARAD; TCP transcription factor
STRINGXP_004137216.11e-120(Cucumis sativus)
STRINGXP_004172687.11e-120(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-64TCP family protein