PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015182.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 323aa    MW: 35620.2 Da    PI: 9.5959
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015182.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.6e-1279123147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  HL.SW.v1.0.G015182.1  79 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 123
                           789*****************77.*********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-1673129IPR009057Homeodomain-like
PROSITE profilePS5129414.1874128IPR017930Myb domain
TIGRFAMsTIGR015571.5E-1877126IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.8E-677129IPR009057Homeodomain-like
SMARTSM007176.5E-1078126IPR001005SANT/Myb domain
PfamPF002494.7E-1079123IPR001005SANT/Myb domain
CDDcd001671.25E-781124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MPHKKAKLYC VLVRVFFCMV SNNPNPSESF YLDPTGMALP GLGPFAAAVT ATATTTSTTS  60
SSEDLSKKIR KPYTITKSRE SWTEPEHDKF LEALQLFDRD WKKIEAFVGS KTVIQIRSHA  120
QKYFLKVQKN GTSEHLPPPR PKRKAAHPYP QKASKNSQVP PPIQVSGAFQ SSSALHEPGY  180
IQMPDSSLRS PLAGAAISSW NNNSAQTVNL SNETKAPSVA NNCCSSTEST PRARPIVETT  240
DLGNHSHQLR VLPDFAQVYS FIGSVFDPNT TGHVQKLKKM DQIDVETRKL LSSYEIESET  300
INQSDAIRSF NDDQPKNVAK IV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027536.11e-178protein REVEILLE 6 isoform X1
SwissprotQ8H0W31e-112RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2P5FGQ11e-177A0A2P5FGQ1_TREOI; GAMYB transcription factor
STRINGEMJ198901e-148(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.19e-97MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]