PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G014904.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family AP2
Protein Properties Length: 540aa    MW: 58791.3 Da    PI: 7.8461
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G014904.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37e-17191240155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  HL.SW.v1.0.G014904.1 191 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 240
                           78*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-9191240IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-15191249IPR016177DNA-binding domain
PROSITE profilePS5103217.794192248IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-17192248IPR001471AP2/ERF domain
CDDcd000182.42E-11192250No hitNo description
SMARTSM003801.1E-32192254IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-6283328IPR016177DNA-binding domain
CDDcd000181.68E-13283328No hitNo description
SMARTSM003807.3E-13284332IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MLDLNVNINM GADSTYEKIE GGAEMMIMEV SEKLQERSRT QMEDSGSSGS SVVNVEIEAL  60
SSTTTITTPS KGAFREEDSS INIMSTSSSA FIFDILKREK DCHIGATPGK ESNTSDPGFL  120
TRSFFPVAGE KGGNQYLEAG SGSSSSRPQW LNLSFADSGG GGGTQPPADV KILQQKQQIK  180
KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG  240
VDADINFNVT DYDEDMMQMK NLSKEEFVQI LRRQSTGFSR GSSKYRGVTL HKCGRWEARM  300
GQFLGKKAYD KAAIKCNGRE AVTNFEHSTY QGEIILDSNA QGGSDHNLDL NLGISPPCDG  360
PKGHEYSFGF GDTRVHWNPR EGPNRIRPTM LLIISTHDSQ QIDGQSSPHI LPPNHTASAT  420
CSGVYPGFLP KHEEMRAMAD DHQKRIAAAN SSQGFLNWAW KIHGNGSNAT SSSCVAMPVF  480
SIAASSGFSS STSLAALSAT NTINPQANFV QNICLSPSLP ITTTNSVTDN FHSSQIHRG*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023629.10.0ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotQ9SK038e-99RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2P5CTE50.0A0A2P5CTE5_TREOI; AP2/ERF transcription factor
STRINGXP_010087870.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.28e-93related to AP2.7