PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G012139.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 330aa    MW: 36243 Da    PI: 6.0317
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G012139.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.16e-38371371100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l ++  re+am++++++++ara  Pv G++ +i++l +++e
  HL.SW.v1.0.G012139.1  37 ACAACKYQRRKCAPDCILAPYFPHDSHRQFLNAHKLFGVSNITKIIKQLdSPAAREQAMRTIIFQSDARAAHPVGGCYHIIQELLRKIE 125
                           7************************************************55666*********************************** PP

                DUF260  89 qlkaelallkee 100
                            +kael+l+++ 
  HL.SW.v1.0.G012139.1 126 ATKAELDLVNQD 137
                           *******99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.86836138IPR004883Lateral organ boundaries, LOB
PfamPF031957.2E-3637135IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSLNPPTTTT TTTTTSNSSL TSSSSSSKGN GNGNGQACAA CKYQRRKCAP DCILAPYFPH  60
DSHRQFLNAH KLFGVSNITK IIKQLDSPAA REQAMRTIIF QSDARAAHPV GGCYHIIQEL  120
LRKIEATKAE LDLVNQDLAV YRAAAAAAAV PPQPQGVPSH HHMDDHHLAM YNNDKIISNM  180
HHDHHHHQFL HSHVIGVDGS DQLQASQYDL VQDDVSSWVV QDSCIDVKPS VGGCGVDDHD  240
DQDLHVKPLL EIPSDEKIIN GIPANFEPHH HHHQRVDEAM LMRTVEDDNV GLKEEDENDQ  300
YSIQQNDNGG DGNDLRDAAT LFTLKNCTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-26331417114LOB family transfactor Ramosa2.1
5ly0_B4e-26331417114LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5FEC71e-114A0A2P5FEC7_TREOI; Lateral organ boundaries domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.15e-49LOB domain-containing protein 22