PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G011673.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 353aa    MW: 39020.4 Da    PI: 8.9657
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G011673.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00059105127123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C+ C++sF++   L  H  +H
  HL.SW.v1.0.G011673.1 105 YECKTCNRSFPSFQALGGHRASH 127
                           99**********99999998887 PP

2zf-C2H2130.0003206228123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++Cg  F++   L  H+r+H
  HL.SW.v1.0.G011673.1 206 HECSICGAEFTSGQALGGHMRRH 228
                           78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.9E-13104129IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.741105132IPR007087Zinc finger, C2H2
SuperFamilySSF576672.65E-8105127No hitNo description
SMARTSM003550.06105127IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SuperFamilySSF576672.65E-8201228No hitNo description
PfamPF139125.3E-13205230IPR007087Zinc finger, C2H2
SMARTSM003550.01206228IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868206233IPR007087Zinc finger, C2H2
PROSITE patternPS000280208228IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEAAPPQEEV ITTASNKEQS LVVKGKRTKR QRPQSPLPFA AIATNSSAGN SGGSSDNDDN  60
PHHHNHNHRH HNQNDKHSHN RKFLEATQAA AAVNKAGAGY NNYAYECKTC NRSFPSFQAL  120
GGHRASHKKP KTMVADQTAE NKRNHLFGLP SDDEDQTQFK TSNNNNNNSS TALSLQLSNN  180
RSSTINSNNN NLYGSTNFVN KASKVHECSI CGAEFTSGQA LGGHMRRHRA PVAGSTTSTA  240
LSLTASANTP PTTTQLMSLD HHHHHHQPQH QSDLDHEQRQ QPQHHRLHQH QQHQTNKTRS  300
VLSLDLDLNL PAPEDDQREL KFGYVAKQQQ QQQQQQSSTL VFSAPALVDC HY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103498.12e-74zinc finger protein ZAT5
TrEMBLA0A2P5AGK94e-90A0A2P5AGK9_PARAD; TFIIH C1-like domain containing protein
STRINGXP_010103498.16e-74(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-33C2H2 family protein