PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G011672.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 293aa    MW: 32642.6 Da    PI: 8.9888
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G011672.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000474365123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C+ C++sF++   L  H  +H
  HL.SW.v1.0.G011672.1 43 YECKTCNRSFPSFQALGGHRASH 65
                          99**********99999998887 PP

2zf-C2H213.40.00024144166123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++Cg  F++   L  H+r+H
  HL.SW.v1.0.G011672.1 144 HECSICGAEFTSGQALGGHMRRH 166
                           78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.8E-134267IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.7414370IPR007087Zinc finger, C2H2
SMARTSM003550.064365IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.74E-84365No hitNo description
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576671.74E-8139166No hitNo description
PfamPF139124.1E-13143168IPR007087Zinc finger, C2H2
PROSITE profilePS501579.868144171IPR007087Zinc finger, C2H2
SMARTSM003550.01144166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MQQRVGDNNH MHNKSRDNRK FLEATQAAAA VNKAGAGYNN YAYECKTCNR SFPSFQALGG  60
HRASHKKPKT MVADQTAENK RNHLFGFPSD DEDQTQFKTS NNNNNNSSTA LSLQLSNNRS  120
STINSNNNNL YGSTNFVNKA SKVHECSICG AEFTSGQALG GHMRRHRAPV AGSTTSTALS  180
LTTSANIPPP TTTQLMSLDH HHQPQHQSDL DHEQRQQPQH HRLHQHQQHQ TNKTRSVLSL  240
DLDLNLPAPE DDQREPKFGF VAKQQQQQQQ QQQQQQSSTL VFSAPALVDC HY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103498.16e-76zinc finger protein ZAT5
TrEMBLA0A2P5AGK98e-93A0A2P5AGK9_PARAD; TFIIH C1-like domain containing protein
STRINGXP_010103498.12e-75(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.16e-37C2H2 family protein