PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G011607.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 237aa    MW: 26007.1 Da    PI: 5.4042
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G011607.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44e-193988255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  HL.SW.v1.0.G011607.1 39 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAAMAYDAAARKLYG 88
                          69****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.40E-223898No hitNo description
Gene3DG3DSA:3.30.730.101.3E-303997IPR001471AP2/ERF domain
PfamPF008474.2E-143988IPR001471AP2/ERF domain
SMARTSM003807.2E-3739102IPR001471AP2/ERF domain
PROSITE profilePS5103222.3663996IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-213996IPR016177DNA-binding domain
PRINTSPR003676.8E-104051IPR001471AP2/ERF domain
PRINTSPR003676.8E-106278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MLKSSIGFGE RKQVKRPAQA SSRKGCMRGK GGPENATCTY KGVRQRTWGK WVAEIREPNR  60
GARLWLGTFD TSHEAAMAYD AAARKLYGSE AKLNLPEVLL SSSSSPSSSS HNKNHICSQM  120
SDQKGLTANL DQPEFLNQKK IDNISDTSRN APVTAAVDSV IPLCDERFTN MESDQVERVD  180
GLWGSVNPSL PEFDDDAIWA EAEMSLDFPI MENQSIFGAN IADGAGWETL RSPWCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-184096360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105262.15e-78probable GTP-binding protein OBGC2
RefseqXP_022772142.16e-82dehydration-responsive element-binding protein 2D-like
TrEMBLA0A2P5BTC41e-112A0A2P5BTC4_PARAD; AP2/ERF domain containing protein
STRINGXP_010105262.12e-77(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-55ERF family protein