PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009297.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 435aa    MW: 48233 Da    PI: 9.1002
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009297.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.23.4e-1622114274
              trihelix   2 WtkqevlaLiearremeerlrrg.k...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                           Wt +e++ Liea++ ++er  ++                      ++ +W++v ++++++g++rs++qC++kw+nl ++ykk+++ e+k
  HL.SW.v1.0.G009297.1  22 WTVSETMILIEAKKMDDERRMKRiTgndndqarssgsttptsnkPAELRWKWVEDYCWRKGCSRSQNQCNDKWDNLMRDYKKVRDYERK 110
                           *************96555555421122445555666666776669999***************************************99 PP

              trihelix  71 rtse 74 
                            +++
  HL.SW.v1.0.G009297.1 111 IAEK 114
                           7544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7131498IPR017877Myb-like domain
PfamPF138371.4E-1221110No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MADQGTNTSS TTLLRDYRKG NWTVSETMIL IEAKKMDDER RMKRITGNDN DQARSSGSTT  60
PTSNKPAELR WKWVEDYCWR KGCSRSQNQC NDKWDNLMRD YKKVRDYERK IAEKSAGGGE  120
DQSYWKIEKN ERKERNLPTN MLPQIYEALV DVVERKSQRL SGGICGVSSI PSSSPSIGYQ  180
MVERTMSSGG GGVHHHPPHH QLQQTPLMSS QALLMQSHHI SATPITALPL PPPSVTVTVA  240
EVAVAPPPPV QVRAQQPPLA LPYSQPIILP TVDSDTSEHP HSPAKRRRKG PEQPYHLHPH  300
PHHHHPLQPQ PQSQPQTQPH QGPVPPPTTS GSGRLISSST ANISPTSSDH QQQVVATAIS  360
KSASIIAEAL HACEEGEQKR HEDLLSLHER RLEIEKSKNE VNRQGINGLV EAINKLANSI  420
QALASDHRNQ STSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022806.11e-132uncharacterized protein LOC21408586
TrEMBLA0A2P5CN851e-174A0A2P5CN85_PARAD; Myb-like domain containing protein
STRINGXP_010098471.11e-135(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-60Trihelix family protein