PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G008324.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GATA
Protein Properties Length: 327aa    MW: 35573.2 Da    PI: 4.9447
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G008324.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.3e-18243277135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  HL.SW.v1.0.G008324.1 243 CSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRL 277
                           *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.3E-821318IPR016679Transcription factor, GATA, plant
SuperFamilySSF577164.28E-14236299No hitNo description
SMARTSM004011.1E-15237291IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.886237273IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-14241275IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.14E-14242290No hitNo description
PROSITE patternPS003440243268IPR000679Zinc finger, GATA-type
PfamPF003201.8E-16243277IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MECVEAAFKT SFEENGVTTD DFFVDDLLNF SNEDGFVEEE EPEEEEDKGF ASVSPSQNQN  60
QNQNQTEAEL DNSNPTSTSF SPKHEFGPVP ATTELSVPVD ELANLEWLSH FVEDSFSEFS  120
TPYLAGVSAE KPKNQTEEVS EPKKLTLPEQ PCFSTPVPAK ARSKRARTGG RVWSLGSPSL  180
TESSSSSTSS SSSSSLSSPW LLYQTLSQDP AGSVEKPPAK KAKKKSTQTD ATGSLTGQPS  240
RRCSHCGVQK TPQWRTGPLG AKTLCNACGV RFKSGRLLPE YRPACSPTFS SELHSNHHRK  300
VLEMRRKKED VPVAESGFAP PVVPSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007204696.11e-123hypothetical protein PRUPE_ppa008278mg
SwissprotQ9FH572e-85GATA5_ARATH; GATA transcription factor 5
TrEMBLM5WGI31e-123M5WGI3_PRUPE; Uncharacterized protein
STRINGVIT_04s0023g02880.t011e-103(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-75GATA transcription factor 5