PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G008123.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family AP2
Protein Properties Length: 445aa    MW: 48855.7 Da    PI: 8.7409
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G008123.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.72.9e-1371127155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  HL.SW.v1.0.G008123.1  71 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 127
                           57*******************6666777775555599******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-971127IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1571136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-1272136IPR001471AP2/ERF domain
PROSITE profilePS5103218.51872135IPR001471AP2/ERF domain
SMARTSM003805.3E-1972141IPR001471AP2/ERF domain
PRINTSPR003674.6E-57384IPR001471AP2/ERF domain
PRINTSPR003674.6E-5117137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MASSSSDPGL KPESSCGGGG GGGGGETSEA VIANDQLLLY RGLKKAKKER GCTAKERISK  60
MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD EEAAARAYDL  120
AALKYWGPGT LINFPVTDYT RDLEEMQNVS REEYLASLRR KSSGFSRGIS KYRGLSSRWE  180
PSFGRMAGSE YLNSIHYGTG DDLATDSEFV GSLCFERKID FTNYIKWWGP NKNRQGESSV  240
KSSEDAKFGC AGDIGGELKT LEWAVQPTEP YQMPRLGVSP EVKQHKSSKV SALSILSRSA  300
AYKSLQEKAS KKQESNADND ENKNKNTMNK MDYGKAVEKS TNHDGASDRY AAALGMSGGL  360
SLQRNMNMFP LSPLLSAPLM TNYNTIDPLV DPIIWTSLAP VLPGGLSRTS EQTAAEADGE  420
FAFLLDLQFT QPRECTMLIQ RSCP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027236.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-165AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2P5EN460.0A0A2P5EN46_TREOI; AP2/ERF transcription factor
STRINGXP_010105336.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-163AP2 family protein