PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G003678.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NF-YC
Protein Properties Length: 257aa    MW: 28438 Da    PI: 6.7246
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G003678.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.41.4e-55821851101
                 NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 
                           ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trt
  HL.SW.v1.0.G003678.1  82 QLRTFWANQyqeIEQSSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170
                           89******99999**************************************************************************** PP

                 NF-YC  87 difdflvdivprdel 101
                           difdflvdivpr++l
  HL.SW.v1.0.G003678.1 171 DIFDFLVDIVPREDL 185
                           ************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.85E-3347176IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.8E-3895168IPR009072Histone-fold
PfamPF008081.6E-21104167IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDQQGHGHGQ RTAMTVGGGS QASYGVNPYQ SNKMMGPSSG GSVGLLQSPT QSAGPSASPQ  60
LAQHQLAYQH IHQQQQEQLQ QQLRTFWANQ YQEIEQSSDF KNHSLPLARI KKIMKADEDV  120
RMISAEAPVI FARACEMFIL ELTLRSWNHT EENKRRTLQK NDIAAAITRT DIFDFLVDIV  180
PREDLKDEVL ASVPRGSLPV AGPADGVPYY YAAPQVAPPG MMVGKPVMDQ AVYGQQTRPY  240
MNQPTWPHQQ QPPNDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C5e-42681824119HapE
4g91_C5e-42681824119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094005.11e-145Nuclear transcription factor Y subunit C-9
SwissprotQ8L4B23e-86NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLW9QV281e-145W9QV28_9R
STRINGPOPTR_0010s03730.11e-125(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.49e-78nuclear factor Y, subunit C9