PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G002287.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 313aa    MW: 35058.6 Da    PI: 7.5394
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G002287.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.6e-18162216256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ ++tk q   Le+ F+++++++ +++++LA++l+L  rqV vWFqNrRa+ k
  HL.SW.v1.0.G002287.1 162 RKKLRLTKRQSALLEDTFKEHNTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTK 216
                           788899***********************************************98 PP

2HD-ZIP_I/II119.32.1e-38162250190
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rl+k q++lLE++F+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E dye +k+++++l+een+rL+ke ++L+ 
  HL.SW.v1.0.G002287.1 162 RKKLRLTKRQSALLEDTFKEHNTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEADYELMKKCCETLTEENKRLRKELQDLK- 249
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 e 90 
                           +
  HL.SW.v1.0.G002287.1 250 S 250
                           4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-17148216IPR009057Homeodomain-like
SuperFamilySSF466896.27E-18153219IPR009057Homeodomain-like
PROSITE profilePS5007117.491158218IPR001356Homeobox domain
SMARTSM003895.5E-16160222IPR001356Homeobox domain
CDDcd000864.36E-15161219No hitNo description
PfamPF000461.3E-15162216IPR001356Homeobox domain
PROSITE patternPS000270193216IPR017970Homeobox, conserved site
SMARTSM003401.2E-18218261IPR003106Leucine zipper, homeobox-associated
PfamPF021835.3E-8218251IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGSSNNGVSN TGLDLGLGNS QYHKAGDQNH DHENKKKLIW LRYDHVLPSL TLGTSSSSSS  60
EYDDDDAHHH HHQTVDQAYQ MTEILSSSSA HHHHHQDLHG RPANYTLSTV SSFSNSSTTV  120
KRDRSDGGGG GEEFEVEAEL ERFSGSRVST NDELDEDQAS PRKKLRLTKR QSALLEDTFK  180
EHNTLNPKQK QDLARQLNLR PRQVEVWFQN RRARTKLKQT EADYELMKKC CETLTEENKR  240
LRKELQDLKS LKVTAPFLVQ IPSTSATLTI CPSCERICGN GGHDGSSFLK IGAKPHHNSF  300
SKPFITNSSA AW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210218RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109438.11e-103homeobox-leucine zipper protein HAT22
SwissprotP466045e-65HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2P5G1321e-116A0A2P5G132_TREOI; Octamer-binding transcription factor
STRINGXP_010109438.11e-102(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-63HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]