PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001167.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 199aa    MW: 21691.7 Da    PI: 6.4953
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001167.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.91.7e-4361051100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +Ca+Ck+lrr+CakdCv+apyf++++p+kfa+vhk+FGasnv+k+l++lp e+r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++
  HL.SW.v1.0.G001167.1   6 PCASCKLLRRRCAKDCVFAPYFASDDPHKFAIVHKVFGASNVSKMLQELPIEQRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSE 94 
                           7**************************************************************************************** PP

                DUF260  90 lkaelallkee 100
                           l+ +la++++e
  HL.SW.v1.0.G001167.1  95 LQMQLAVAQAE 105
                           ******99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.195106IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-436103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVGNSPCASC KLLRRRCAKD CVFAPYFASD DPHKFAIVHK VFGASNVSKM LQELPIEQRA  60
DAVSSLVYEA NARMRDPVYG CVGAISYLQN QVSELQMQLA VAQAEILCIQ MQQDPATMVG  120
GGVSGGGSTP PVEMDPVDQI NYFGHYDKSC FLGQNNNGLM TMSPPHHHQY HNFSSSTTSI  180
VIHDSLKRET LFGNDMVS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877452.17e-90PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW33e-72LBD12_ARATH; LOB domain-containing protein 12
TrEMBLB9S4618e-90B9S461_RICCO; LOB domain-containing protein, putative
STRINGPOPTR_0010s19180.14e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-73LBD family protein