PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han007474
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family WRKY
Protein Properties Length: 197aa    MW: 21186.2 Da    PI: 8.898
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-39002PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.7e-2992150259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK++kgs++pr+YYrC+++ +C+++k+vers  +p+ +++ Y+g+H h+
  Han007474  92 NDGWAWRKYGQKPIKGSPYPRNYYRCSTTkDCSARKQVERSPVNPSSFIVSYSGDHLHP 150
                8*************************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-2978152IPR003657WRKY domain
SuperFamilySSF1182901.83E-2586152IPR003657WRKY domain
PROSITE profilePS5081130.90586152IPR003657WRKY domain
SMARTSM007741.8E-3391151IPR003657WRKY domain
PfamPF031061.0E-2492150IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MADDGWDLHA VVRSCTASAS AADNTPAAME DVGAQSLAAT AAVTSISFED GRSAYGQTNF  60
ISFSMTPVDS ARKRKSKNNK RIVETREEEL SNDGWAWRKY GQKPIKGSPY PRNYYRCSTT  120
KDCSARKQVE RSPVNPSSFI VSYSGDHLHP RPTHLSSLAG TTKTTKAVVG VTDLPEQPPC  180
SSSSPASTSS FSPATPX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-1982152877Probable WRKY transcription factor 4
2lex_A1e-1982152877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021989298.11e-140probable WRKY transcription factor 27
SwissprotQ9FLX87e-41WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLA0A251TMM21e-139A0A251TMM2_HELAN; Putative WRKY domain-containing protein
STRINGXP_002513635.19e-47(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.13e-35WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]