PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006759
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family C3H
Protein Properties Length: 228aa    MW: 25944 Da    PI: 6.0949
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48337052PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.5e-1197119426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                e C ++ rtG Ck+G++CkF+H+
  Han006759  97 EDCAYYIRTGMCKFGSNCKFNHP 119
                79********************8 PP

2zf-CCCH19.32e-06146168527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                +C+++  +  CkyG  CkF+Hg+
  Han006759 146 ECKYHTSSAGCKYGKACKFNHGR 168
                799666666************96 PP

3zf-CCCH25.71.9e-08189213226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++++C++++r+G  +yG++C+F+H+
  Han006759 189 GEKECPYYMRNGSLQYGPSCRFNHP 213
                7899********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.72E-793121IPR000571Zinc finger, CCCH-type
SMARTSM003560.001793120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.02393121IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-797119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-599118IPR000571Zinc finger, CCCH-type
SMARTSM003564.2141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.042141169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-5143169IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4145168IPR000571Zinc finger, CCCH-type
SMARTSM003560.011187214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.465187215IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-6189213IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MEEEDPFGPK SQQQLPDSID NDHLVQILAQ DLQNLVLSCN QLEAESSSGT EKVDPNEFRV  60
LEDEDASVDE RVQDLENQTK NVKAAAAYHY LLRLDAEDCA YYIRTGMCKF GSNCKFNHPI  120
RRKIQPIKET KKQKEENVVE RHAQTECKYH TSSAGCKYGK ACKFNHGRGK SVKTPVAEYN  180
FLGLPIRPGE KECPYYMRNG SLQYGPSCRF NHPDPTAVWG DDVPHTMQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.85870.0embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022015344.11e-161zinc finger CCCH domain-containing protein 67-like
TrEMBLA0A251RVH41e-160A0A251RVH4_HELAN; Putative zinc finger, CCCH-type
STRINGEOY223603e-60(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.17e-54C3H family protein