PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006261
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family C3H
Protein Properties Length: 245aa    MW: 26601.5 Da    PI: 9.4423
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48317961PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.45.7e-09120143226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                k + C+f+ + G C++G+rC+++H+
  Han006261 120 KDKVCNFWIQ-GSCSFGERCRYMHS 143
                5678******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.152247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.382248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22119145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7119143IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6120144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-6120143IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-6120143IPR000571Zinc finger, CCCH-type
SuperFamilySSF509784.58E-11142230IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.8E-11144229IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.9E-4148187IPR001680WD40 repeat
PROSITE profilePS5008213.616155196IPR001680WD40 repeat
PROSITE profilePS5029412.605155196IPR017986WD40-repeat-containing domain
PROSITE patternPS006780174188IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDYDGGKRVF NRLGPTQPQT DNRNQKVCYH WRAGNCSRFP CPFLHRELSA PVNGTTSSSS  60
SSKRSHGFDN DQRSAVARRG GSNLNTWGRG GGRGGNVINN NNNNVNSRGG GTGTGVGVKK  120
DKVCNFWIQG SCSFGERCRY MHSWCTGGFG MLTQLEGHKK VVSGIALPAG SDKLYTGSRD  180
ETVRVWDCQS GQCAGVINLS GEVGCMLSEG PWMFVGLPNL XKAWNVQTSA ELSLNGPVWQ  240
SILWL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022001286.11e-139zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ23e-81C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A251SSG71e-137A0A251SSG7_HELAN; Putative zinc finger CCCH domain-containing protein 17
STRINGSolyc03g026350.2.13e-91(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.15e-77zinc finger WD40 repeat protein 1