PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han005970
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family C3H
Protein Properties Length: 254aa    MW: 28598.9 Da    PI: 4.5345
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48328558PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.65e-14154176426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                e C++++rtG CkyG++CkF+H+
  Han005970 154 EDCSYYMRTGMCKYGSTCKFNHP 176
                89********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.05E-6150178IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6150177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774150178IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10154176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-6156175IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.695203226IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDHSSLGAKS PPPDSPLQSD SSIDSDKLLQ ILTQDFQTLV LSSNDAQPFH QHHSYPLATQ  60
DEDQIKQPPD DELVDKVTVN VNEAFEPESL YGAEEKILEE EDDDHKECRV LEERESEVAD  120
DEIGGYESEN VGGSSVSVVE DGKGYHYPLR PDAEDCSYYM RTGMCKYGST CKFNHPLRRK  180
HQQTSKETHK QKEENMEMHG QIECKYYLSP AGXQYGKSXQ FSHGRGKTVT TPVVEYNFLG  240
FAIPTGEKSV LLHA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021984094.11e-173zinc finger CCCH domain-containing protein 67-like isoform X1
TrEMBLA0A251U0I11e-169A0A251U0I1_HELAN; Putative zinc finger C-x8-C-x5-C-x3-H type family protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.16e-31C3H family protein