PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han005934
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family WRKY
Protein Properties Length: 256aa    MW: 27191.2 Da    PI: 4.9736
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-764PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY55.21.4e-17228255229
                --SS-EEEEEEE--TT-SS-EEEEEE-S CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCts 29 
                +DgynWrKYGqK+vk se+prsYY+Ct+
  Han005934 228 KDGYNWRKYGQKQVKASEHPRSYYKCTH 255
                7**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-15220255IPR003657WRKY domain
PROSITE profilePS5081115.112222256IPR003657WRKY domain
SuperFamilySSF1182909.42E-14226255IPR003657WRKY domain
SMARTSM007749.9E-7227256IPR003657WRKY domain
PfamPF031067.3E-13228255IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAETNGGSAA PPPPPPQRRV PVPPIALPPQ SSFETLFTGG QIPGFSPGPM TLVSNYFSDQ  60
YPDVDCRSFS QLLAGAMASP VSKISPASVV EGTDEKKSGG FKQNRPVDLV IAQSPSGFMF  120
PSVFSPSGFL NSPGFFSPLQ SPFGMSHQQA LAHVTAQAAL SQSYFNPVQP ENGSSATIVS  180
EGESYMVNAV NANPEIEDSQ VGSPDGFPGS QSDVTEPQQV VSVSADTKDG YNWRKYGQKQ  240
VKASEHPRSY YKCTHP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022012682.10.0probable WRKY transcription factor 4
SwissprotQ9XI902e-44WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A251SAJ70.0A0A251SAJ7_HELAN; Putative WRKY domain-containing protein
STRINGXP_009603130.11e-65(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.15e-47WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]