PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han005639
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family C3H
Protein Properties Length: 265aa    MW: 30508.1 Da    PI: 5.9467
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48347571PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-062447226
               -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
               k  lC ff + G+C  G +CkF+H+
  Han005639 24 KSILCEFFKA-GQCAKGFKCKFSHD 47
               6679**7777.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.14E-62247IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-42248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1592249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-42448IPR000571Zinc finger, CCCH-type
SMARTSM003565.992129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.78492130IPR000571Zinc finger, CCCH-type
PfamPF165433.3E-15149227IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
REGAXMICLD CCCSPKVPVG VDPKSILCEF FKAGQCAKGF KCKFSHDLNV QRKGEKIDIF  60
SDKRDEETME DWDLEMLEKV VASKGKEYNQ NKPTDIVCKH FLDAVEKKQY GWFWVCPNGN  120
KECHYRHALP PGYILKSQMK ALLEEEANKL AIEDEIEDQR SKVKTTTPMT TDLFVQWKKK  180
VDEKEAGLAA QRAERAKNDR MSGRELFLSD ASVFVDDAEA YEKYNREEEP DNTADXHKKI  240
HLQGGQVHQQ MWLLLLLKTG ILEIX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.98680.0embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021997902.11e-162zinc finger CCCH domain-containing protein 11-like
SwissprotQ0JHZ21e-138C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A251T2241e-161A0A251T224_HELAN; Putative zinc finger, CCCH-type, ZC3H15/TMA46 family
STRINGOB01G45080.11e-136(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-121C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]