PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han004218
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family C3H
Protein Properties Length: 392aa    MW: 43557.1 Da    PI: 8.3514
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-36789PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.6e-097797526
               --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                C f+++ G C yG+rC++ H+
  Han004218 77 VCTFYQK-GACAYGSRCRYDHV 97
               5******.*************7 PP

2zf-CCCH17.29.5e-06176195626
                -SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                C+ fa+ G C++G++C+  Hg
  Han004218 176 CS-FAAAGSCPRGENCPHVHG 195
                66.*************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5874471IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-74469IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-54570IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3147299IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-47498IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-57596IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-67797IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-47796IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.371170197IPR000571Zinc finger, CCCH-type
SMARTSM003560.19171196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001175195IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.55E-13228303No hitNo description
Gene3DG3DSA:3.30.40.104.9E-10232298IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001622.14E-4238298No hitNo description
PROSITE profilePS5008912.209239297IPR001841Zinc finger, RING-type
SMARTSM001842.9E-7239296IPR001841Zinc finger, RING-type
PfamPF000976.9E-7239296IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180263272IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.081326354IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911326355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
XAGSKVAFEG RLNLKGYSSS SFNPKSPMKI AATEISPIMS LPANRTRVLC KFFAHGACLK  60
GEHCEFSHDW KDPANNVCTF YQKGACAYGS RCRYDHVKVP QRQASASSST YSYQYAVSES  120
VSATAATGIT GEVSTVSRPF VSPAQSAWGE GSGENDLVND VIGQSRSTNP SDIVMCSFAA  180
AGSCPRGENC PHVHGDICPT CKKQCLHPFR PDEREEHKRS CEKKHKHLEA LKHSQEIECS  240
VCLERVLLKP TAAERKFGLL SECDHPFCIS CIRNWRSSSP TSGMDVNSAL RSCPICRKLS  300
YFVIPSVIWY ATKEEKQEIV DSYKARLRSI DCRHFDFGNG TCPFGSSCFY KHAYRDGRLE  360
EVVLRHLGAE DGQTVVAKDI RLSDFLSRMR IR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021977033.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N41e-170C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A251VP100.0A0A251VP10_HELAN; Putative zinc finger CCCH domain-containing protein 69
STRINGXP_002526765.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-148C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]