PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han002060
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family C3H
Protein Properties Length: 273aa    MW: 30297.4 Da    PI: 5.1111
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-27648PU_refplantGDBView CDS
gnl|UG|Han#S32076928PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-07247267526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C  Gd+C +aHg
  Han002060 247 PCPEFRK-GSCVKGDSCEYAHG 267
                8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.18E-1720152IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.6E-1822165IPR020683Ankyrin repeat-containing domain
PfamPF127961.0E-959132IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.92663159IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0456393IPR002110Ankyrin repeat
CDDcd002041.94E-1565144No hitNo description
PROSITE profilePS5008813.27798133IPR002110Ankyrin repeat
SMARTSM002486.4E-498130IPR002110Ankyrin repeat
SMARTSM003561.0E-5242268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5242268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.009242269IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDEEKLAEKY QGLFLKCSNL LELAAADDVT GFVHMVEDSG VCIDEVSFWY GRRIGDLRKM  60
GLEERTPLMI ASTYGSIRVL KYIIGTKKVD VNKFSDSDGA TALHCAVAGG SPTSVAVVKL  120
LLEASADVNM TDDNGNKAVD LIARGVKAST RRALEMLLKG LSIEDGNDEE LINEKEAVAA  180
KKEYPVDVSM PDINNGVYGS DEFRMYTFKV KTCSRAYTHD WTECPFVHPG ENARRRDLRK  240
FNYSCVPCPE FRKGSCVKGD SCEYAHGVFE SWL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022016910.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE61e-102C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A251RWW20.0A0A251RWW2_HELAN; Putative zinc finger (CCCH-type) family protein
STRINGGorai.011G289400.11e-121(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-104C3H family protein