PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han001754
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family C3H
Protein Properties Length: 287aa    MW: 31762.9 Da    PI: 6.507
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-43190PU_refplantGDBView CDS
gnl|UG|Han#S32079731PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.3e-07244264526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C  Gd C FaHg
  Han001754 244 PCPEFRK-GSCVKGDLCEFAHG 264
                8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127963.8E-1057133IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.02E-1860152IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00226494IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.1E-1964165IPR020683Ankyrin repeat-containing domain
CDDcd002044.17E-1664159No hitNo description
PROSITE profilePS5029718.08664160IPR020683Ankyrin repeat-containing domain
SMARTSM002480.003299131IPR002110Ankyrin repeat
PROSITE profilePS5008812.15599134IPR002110Ankyrin repeat
PRINTSPR014159.3E-5100115IPR002110Ankyrin repeat
PRINTSPR014159.3E-5118132IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.105.8E-5236266IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-4239265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.836239266IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEGEIKFQEK QIGAFLNSSS LLELAATDDV FRLQYEVETN GTRLDDVGLW YGRKNGCKTK  60
MGLEKRTPLM IASVYGSTNV VKYIIGSGKA DVNKVSDSDG ATALHCVAAG GSSSSVETVK  120
LLLEAGADQN LTDANGNKPV DLIARGVKSA KRKALEMLLK GLLINEAEIE EAEVVTAKKE  180
YPVDVSLPDI NEGVYGTDEF RMYMFKVKPC SRAYSHDWTE CPFVHPGENA RRRDPRKHQY  240
TCVPCPEFRK GSCVKGDLCE FAHGVFESWL HPAQYRTRLC KDETGCX
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022006453.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE61e-123C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A251SLW90.0A0A251SLW9_HELAN; Putative zinc finger, CCCH-type, Ankyrin repeat-containing domain protein
STRINGXP_004307656.11e-135(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-124C3H family protein