PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48908.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 178aa    MW: 19836.6 Da    PI: 8.2117
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48908.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260145.91.1e-45131121100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrr+C++dC++apyfpa++p+kf  vhk+FGasnv k+lk+lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++
  KHN48908.1  13 PCAACKLLRRRCTPDCAFAPYFPADEPQKFDSVHKVFGASNVNKMLKELPEHQRSDAVSSMVYEAKARVRDPVYGCVGAISSLQQQVDVLQTQLALAQA 111
                 7**********************************************************************************************9997 PP

      DUF260 100 e 100
                 e
  KHN48908.1 112 E 112
                 6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.94612113IPR004883Lateral organ boundaries, LOB
PfamPF031958.2E-4513110IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0004088Molecular Functioncarbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKESGRKQGT MSPCAACKLL RRRCTPDCAF APYFPADEPQ KFDSVHKVFG ASNVNKMLKE  60
LPEHQRSDAV SSMVYEAKAR VRDPVYGCVG AISSLQQQVD VLQTQLALAQ AEVVHMRMRQ  120
FSPLSDQQQQ PSVLPEASNA SSENLYHSSR LLSSQTKSLF SMDMVVDQAN MGQSLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-5091147112LOB family transfactor Ramosa2.1
5ly0_B2e-5091147112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48908.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0978640.0BT097864.1 Soybean clone JCVI-FLGm-16M12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241363.11e-131uncharacterized protein LOC100790989
RefseqXP_028202173.11e-131LOB domain-containing protein 4-like
SwissprotQ9SHE93e-68LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A445GYE81e-129A0A445GYE8_GLYSO; LOB domain-containing protein 4
TrEMBLC6TJL61e-129C6TJL6_SOYBN; Uncharacterized protein
STRINGGLYMA15G41020.11e-130(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.12e-61LOB domain-containing protein 4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]